|
About the Frequently Asked Questions category
|
|
0
|
445
|
8 March 2021
|
|
How is the OT Genetics score listed in the OT Platform calculated?
|
|
2
|
119
|
15 April 2024
|
|
What is the best way to query pheWAS traits for multiple variants?
|
|
5
|
637
|
10 August 2023
|
|
How are associations scores calculated in the Open Targets Platform?
|
|
0
|
468
|
16 June 2023
|
|
Why does Open Targets Genetics display partial L2G scores on Locus pages when there is no evidence of colocalization?
|
|
0
|
505
|
3 November 2021
|
|
Why are beta and odds ratios not always displayed in Open Targets Genetics?
|
|
0
|
1316
|
26 August 2021
|
|
In the “tag variants” section of variant summary pages in Open Targets Genetics, why do some SNPs have a posterior probability and others don’t?
|
|
0
|
445
|
23 August 2021
|
|
How can I download data from Open Targets Genetics?
|
|
0
|
1314
|
4 August 2021
|
|
How often is Open Targets Genetics updated?
|
|
0
|
461
|
29 July 2021
|
|
In Open Targets Genetics, what is the “credible set overlap”?
|
|
0
|
906
|
22 July 2021
|
|
How to interpret Variant-to-Gene (V2G) and Locus-to-Gene (L2G) scores in Open Targets Genetics
|
|
0
|
1335
|
19 July 2021
|
|
What fine-mapping and colocalisation software does Open Targets Genetics use?
|
|
0
|
510
|
14 July 2021
|
|
How are tag variants identified in Open Targets Genetics?
|
|
0
|
537
|
12 July 2021
|
|
How are UK Biobank study traits identified in Open Targets Genetics?
|
|
0
|
442
|
7 July 2021
|
|
What do scores represent in downloaded tables of eQTL data for query variants
|
|
1
|
232
|
4 January 2023
|
|
Beta values in study colocalisation table of study locus page
|
|
2
|
342
|
17 November 2022
|
|
Conserved regions variants
|
|
2
|
327
|
27 July 2022
|
|
What happened to the batch search functionality?
|
|
12
|
1506
|
18 July 2022
|
|
How can I view diseases and phenotypes associated with a given target?
|
|
0
|
473
|
8 March 2021
|
|
Exact relationships between drug scores and clinical trial evidence
|
|
7
|
538
|
24 May 2022
|
|
Which version of GTEx does Open Targets Genetics use for colocalization analysis?
|
|
1
|
434
|
20 May 2022
|
|
How does the Platform display direct and indirect evidence?
|
|
7
|
856
|
13 May 2022
|
|
How was LD clumping performed to select eQTLs for candidate gene?
|
|
3
|
346
|
11 May 2022
|
|
Where to find eQTL information regarding a SNP in Open Targets Genetics?
|
|
1
|
442
|
21 March 2022
|
|
Defintion of the fields in the ftp files? Where are the PCHi-C files?
|
|
2
|
426
|
16 March 2022
|
|
Empty results pages
|
|
6
|
328
|
10 March 2022
|
|
Comparing targets in the Open Targets Platform
|
|
1
|
336
|
2 March 2022
|
|
How are rsIDs mapped to unique variants in Open Targets Genetics?
|
|
1
|
719
|
1 March 2022
|
|
What is the difference between the Open Targets Platform and the Open Targets Genetics Portal?
|
|
0
|
418
|
16 June 2021
|
|
Score values from Disease->Target vs. Target->Disease
|
|
3
|
541
|
25 June 2021
|