The JSON files for the 22.09 release are not in the directory that the genetics-bakend loader scripts expects them

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1

I am trying to load the 22.09 release data into my own instance of the genetics portal and the loader script genetics-backend/loaders/clickhouse/create_and_load_everything_from_scratch.sh seems to assume that the JSON data for the studies and genes are in directory:

"${base_path}"/json/lut/study-index/part-*
and
"${base_path}"/json/lut/genes-index/part-*

But there is no JSON folder in the released data on FTP, nor on Google Cloud…

There IS a directory that contains JSON files that seems to be the same, but I did not check thoroughly in directory:

"${base_path}"/search/study/part-*
and
"${base_path}"/search/genes/part-*

Are those indeed the same and should I just change the elasticsearch-loader to read from those?

Thanks
Thon

2

I just checked and the two directories contain different information, so I am guessing I just have to MAKE the JSON files for the import into ELASTICSEARCH myself? Can easily be done, but surprised the JSON files are not provided in the release of 22.09…