For example, in BMI trait: Open Targets Genetics, does the p-value in Association Information table display the p-values in GWAS summary statistics? Thank you!
Dear Li_Yujue, welcome to our Community and thank you for your question.
In the example reported by you (GWAS study with summary statistics), the value in the Association Information is the conditional pvalue on secondary signals as reported by COJO. When a study does not have sumstats, that is the top-hit curated p-value as reported in the original publication.
I hope this helps!
Best wishes,
Annalisa