# Full summary statistics

**URL:** <https://community.opentargets.org/t/full-summary-statistics/1615>\
**Category:** Data downloads\
**Tags:** genetics-portal\
**Created:** [3 December 2024 15:03 UTC](https://community.opentargets.org/t/full-summary-statistics/1615 "2024-12-03T15:03:51Z")\
**Posts on this page:** 4\
**Page:** 1

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**Author:** ![abhukku](https://avatars.discourse-cdn.com/v4/letter/a/8dc957/32.png) [@abhukku](https://community.opentargets.org/u/abhukku)\
**Post date:** [3 December 2024 15:03 UTC](https://community.opentargets.org/t/full-summary-statistics/1615/1 "2024-12-03T15:03:51Z")

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Hi all! I was looking into using the full summary statistics from the open targets genetics portal (looking in the “sa\_gwas” folder within the data downloads), and I found that only variants with P \< 0.005 were included. Is there a location that has the full, unfiltered summary statistics? thank you!

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**Author:** ![Annalisa\_Buniello](https://dub1.discourse-cdn.com/flex017/user_avatar/community.opentargets.org/annalisa_buniello/32/426_2.png) [@Annalisa\_Buniello](https://community.opentargets.org/u/Annalisa_Buniello)\
**Post date:** [5 December 2024 10:03 UTC](https://community.opentargets.org/t/full-summary-statistics/1615/2 "2024-12-05T10:03:32Z")

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Dear Abhukku,  
welcome to our community and thanks for your question!  
We don’t make full summary statistics available to the community, but only to partners and collaborators.  
For the GWAS Catalog studies, I would suggest to download the full and harmonised summary statistics from their [public FTP](https://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/). You can find a list of studies with summary statistics (with download link) on [this page](https://www.ebi.ac.uk/gwas/downloads/summary-statistics).

I hope this helps!  
Best wishes,

Annalisa

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**Author:** ![abhukku](https://avatars.discourse-cdn.com/v4/letter/a/8dc957/32.png) [@abhukku](https://community.opentargets.org/u/abhukku)\
**Post date:** [5 December 2024 15:56 UTC](https://community.opentargets.org/t/full-summary-statistics/1615/3 "2024-12-05T15:56:15Z")

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Thanks so much, that’s very helpful! As a follow-up, are the analyses (e.g. coloc, fine-mapping) done on the data filtered by the .005 p-value, or on the full summary stats? Thanks again for all of the help!

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**Author:** ![Annalisa\_Buniello](https://dub1.discourse-cdn.com/flex017/user_avatar/community.opentargets.org/annalisa_buniello/32/426_2.png) [@Annalisa\_Buniello](https://community.opentargets.org/u/Annalisa_Buniello)\
**Post date:** [5 December 2024 17:57 UTC](https://community.opentargets.org/t/full-summary-statistics/1615/4 "2024-12-05T17:57:18Z")

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You are welcome!

The analyses you mention have all been performed on full sumstats.  
The filtered dataset is mainly generated to build the PheWas plot.

Let us know if you have any further questions on this.  
Best,

Annalisa